Therefore, it is likely that intracellular blood-borne pathogens

Therefore, it is likely that intracellular blood-borne pathogens A. phagocytophilum and B. microti could be present in higher numbers in the cells even if the patient has coinfection with B. burgdorferi. To determine whether detection of B. burgdorferi will be affected by the presence of higher levels of bacteremia and parasitemia due to A. phagocytophilum and B. microti, this website respectively, we mixed genomic DNA of all three pathogens such that the copy number of BmTPK and APH1387 was 100-fold higher than that of the recA copies of B. burgdorferi. Interestingly, we were able to consistently detect ten copies of recA per

one thousand copies of BmTPK and APH1387 in a multiplex assay (Figure 6B). These results in the Figure 6 demonstrate that irrespective of the levels of each pathogen quantity Palbociclib supplier relative to the other two pathogens, our

multiplex assay can accurately detect and even quantify each pathogen in the mixture. Differentiation of Lyme spirochetes using denaturation curve analysis The PCR assay for B. burgdorferi described in Figure 2 failed to both amplify and detect B. afzelii and B. garinii amplicons efficiently and differentiate these three Lyme spirochetes. Inefficiency of the PCR amplification for B. afzelii and B. garinii amplicons is likely due to the presence of SNPs found in the RecF and RecR primers binding sites in these two species. RecF and RecR primers were designed based upon B. burgdorferi sequence. Therefore, conserved primers RecF3 and RecR3 were selected for amplification of a 287 bp size amplicon of the recA gene by PCR all three species. These primers amplified the gene

fragment from all three species efficiently. To clearly distinguish three Borrelia species using the denaturation profiles, we conducted asymmetric PCR in which RecR3 primer that synthesizes DNA strand targeted by molecular beacon probe was used in excess. This significantly increases the availability of amplified DNA target for the RecA3 probe to bind. SNPs that are present in the probe-binding region of the amplicon affect the temperature required to denature the probe-target hybrid. Indeed, denaturation profile obtained after asymmetric PCR completion was able to distinguish three Borrelia species, with a melt peak of 66°C for B. burgdorferi, 59°C for B. afzelii, and 55°C for B. garinii (Figure 7). Figure 7 Denaturation profiles can distinguish MRIP three major Lyme spirochete species. Amplification of 287 bp amplicons from B. burgdorferi, B. afzelii and B. garinii by real-time PCR using conserved primers was followed by a denaturation profile analysis. SNPs in the molecular beacon-binding region of B. burgdorferi, B. afzelii and B. garinii resulted in at least 4°C melting temperature difference between the species such that RecA3 molecular beacon was able to distinguish all three Borrelia species when first derivative analysis of the denaturation profile was conducted. Real-time PCR can successfully detect low numbers of B.

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