This specimen was frozen and stored at −20 °C Approximately 1 cm

This specimen was frozen and stored at −20 °C. Approximately 1 cm3 of sponge tissue was excised from the middle of the entire sponge and washed three times with sterile artificial seawater (ASW) (Aquasonic, NSW, Australia). A sponge homogenate was prepared by cutting sponge tissue into small pieces and homogenizing with 5 mL of ASW using a sterile mortar and pestle. Fast-growing mycobacteria were isolated from A. queenslandica, after 100 μL of each of a twofold dilution series of the sponge homogenate (up to 1/16 dilution) was inoculated onto a glycerol–asparagine medium consisting of 10 mL of glycerol, 1.0 g of l-asparagine, 1.0 g of K2HPO4, 16.6 g of artificial sea salts, 9.0 g

of Davis agar, and 1000 mL of distilled water, followed by incubation at 28 °C. This medium was supplemented with buy FDA-approved Drug Library 50 μg mL−1 of cycloheximide and 20 μg mL−1 of nalidixic acid to inhibit the growth of fungi and fast-growing bacteria. Colonies appearing after 3 weeks were picked for single-colony purification. Salinispora strains were isolated from homogenates of A. queenslandica using starch–yeast extract–peptone (SYP) medium and the method described by Kim et al. (2005), with the

exception Ibrutinib clinical trial that the pH of the medium was not adjusted. Some of the Mycobacterium strains were also isolated using this method. A slow-growing Mycobacterium species was isolated from Fascaplysinopsis sp. using a low-nutrient broth enrichment medium consisting of 0.001% peptone, 0.001% yeast extract, 0.001%d-glucose, 20 mL

of Hutner’s basal salts (Schlesner, 1994), 10 mL of vitamin solution no. 6 (Schlesner, 1994), 5 mL of 0.1 M Tris/HCl buffer (pH 7.5), and 1000 mL of ASW. Fifty milliliters of the low-nutrient broth enrichment medium supplemented with 50 μg mL−1 of cycloheximide and 500 μg mL−1 of ampicillin in a 250-mL Erlenmeyer flask was inoculated with 1 mL of homogenate of Fascaplysinopsis sp. and incubated on a rotary shaker (260 r.p.m.) at 28 °C in the dark for 1 month. STK38 Subsequently, a portion of this broth enrichment was plated on 1/10 strength Marine 2216 medium supplemented with 50 μg mL−1 of cycloheximide and 200 μg mL−1 of ampicillin. Colonies appearing after 2 months were purified using the single-colony subculture technique on the same medium. Genomic DNA was extracted from the isolates using a Wizard® Genomic DNA Purification Kit (Promega, WI) with the recommended protocol for Gram-positive bacteria. The 16S rRNA gene sequence was amplified with the 27f (AGAGTTTGATCMTGGCTCAG) and 1492r (TACGGYTACCTTGTTACGACTT) primer set. In addition to the 16S rRNA gene, rpoB and hsp65 genes were analyzed to determine their evolutionary relationship within the genus Mycobacterium. Amplification of the hsp65 gene was performed with the primers Tb11 (ACCAACGATGGTGTGTCCAT) and Tb12 (CTTGTCGAACCGCATACCCT) (Telenti et al.

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