13%). inhibitor Vandetanib Of the 1,888 genes predicted from the genome, 1,831 are protein-coding genes. Of the protein coding genes, 1,279 were assigned to a putative function, with those remaining annotated as hypothetical proteins. The properties and the statistics of the genome are summarized in Figure 3 and Tables 3 and and44. Figure 3 Graphical circular map of the genome. From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs cyan, rRNAs red, other RNAs blue), GC content, GC skew. Table 3 Genome statistics Table 4 Number of genes associated with the 25 general COG functional categories Acknowledgements The genome of Thermovibrio ammonificans was sequenced under the auspices of the US Department of Energy. Work on T.
ammonificans was supported, entirely or in part, by NSF Grants MCB 04-56676, OCE 03-27353, MCB 08-43678, OCE 09-37371 and OCE 11-24141 to CV, and by the New Jersey Agricultural Experiment Station.
In March of 2011, a planning meeting on managing data at the interface between biodiversity and (meta)genomics was held at the University of California at San Diego [1]. The recommendations of that planning meeting were brought to the GSC11 meeting, held 4-6 April 2011 at the Wellcome Trust Conference Centre in Hinxton England. The recommendations were presented in plenary session of the full GSC meeting, then discussed at length in breakout sessions of the GSC Genomic Biodiversity Working Group (GBWG).
This report summarizes the discussion, analysis, conclusions, and recommendations that occurred on this topic at the GSC11 meeting, particularly in the GBWG breakout sessions. Also, in early 2011, the Global Biodiversity Information Drug_discovery Facility (GBIF) had independently issued a ��Request for proposals to draft a GBIF position paper on the publishing and discovery of, and access to, primary biodiversity data in the form of genomic level observations�� [2] with a submission date in March; this request was later withdrawn. Given our knowledge of their interests, GBIF was subsequently invited to attend the GSC11 meeting, so that mutual interests could be explored. Purposes of the Meeting The purposes of the meeting were to present the GBWG planning-meeting recommendations to the full GSC plenary session for input, and then to hold GBWG breakout sessions to consider the recommendations in depth and form task groups as necessary. Participants Participants included members of the GBWG and other participants at GSC11, including attendees from GBIF, who are especially interested in this activity. Activities and Analysis The recommendations of the planning-meeting were considered during the first GBWG breakout session.
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